PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000216.1_g00012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 223aa    MW: 24123.8 Da    PI: 9.0557
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000216.1_g00012.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002388110123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++C k F ++  L  H++ H
  Itr_sc000216.1_g00012.1  88 FECQYCFKEFANSQALGGHQNAH 110
                              89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.06E-784115No hitNo description
Gene3DG3DSA:3.30.160.606.6E-684114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.40688115IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSKDISTSLS SSPCKNGDNE SRPPAKKLKL FGFDLAGETK TDVSKEDHDS ANSSSSSTTV  60
VSSAASGDKP AAVCGGSVAG AGAGERKFEC QYCFKEFANS QALGGHQNAH KKERMRKKRL  120
QIQARKASLS CYYLQQHPFL QNNNSSPSWL FDPSSANSSD QLPPFEGSQI SFGSQEPFLP  180
DSSAMFFTLS TNNPRKISKN HHSNKTCKSL DLQLGLSLLH STH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPGSC0003DMT4000403274e-36(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51362130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.17e-16zinc finger protein 5